Scaffold Ga0214210_1000049

Overview

Basic Information

• Taxon OID: 3300020689
• Scaffold ID: Ga0214210_1000049
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 32513
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (13.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F035305	Metagenome	172	N
F090396	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214210_100004913	F090396	AGGAG	MCRYKEKGEALPLRVIELVPVAERIPALKEMYGTDKIAAVLSKQITRTLNNFNLRVGMTPEQVADLSYSILDEAESDQLAIQDILLFLDGLPKFKYGKVYDRMDMPTFFEMLEKYREERHQAYINVKEEEHAQFKAMGDSNRTSQDIDKEANRNAMANYLKTK
Ga0214210_100004917	F035305	N/A	MNHLAIWEIAPTKSDIDALAQNVANELNEGTIKPEDVAVKVAVVEAFAKQLRAKSEEYIIDFLDKCPKGKYDHLGANLALKDSQTYDYAAYSEKWAELQTKIELLKAEQKEIEDNGKKFERGQIPLKSYKQSYTITLNK
Ga0214210_100004921	F008423	N/A	MEKLNYQGKQLKLHKRAACLLELLKAAQTRQTYHERDLSLWRRGVNDEPIRLFQKEEDILIKIARMNEVQKRILKSYHRLILELYEITDTFHLPINIFL