Scaffold Ga0214239

Basic Information
Taxon OID	3300020688 Open in IMG/M
Scaffold ID	Ga0214239_100068 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020688 Open in IMG/M

Scaffold ID

Ga0214239_100068 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	30650
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (70.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

30650

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (70.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001201	Metagenome / Metatranscriptome	749	Y
F008619	Metagenome	330	Y
F074309	Metagenome	119	N
F079411	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214239_10006824	F001201	N/A	MYKEGRQIVTDIAKEVDGVVKDVKTVQKKAKGLLGFLSAVFGKKEEEQPQVAQPAKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNGLKNYKKEQEELALHATNEEGNEIAIKLVIADLQMEKLNSELSNYMVYHVPSELKDLYSRVNEQIGHIANVQALARREELLAKRKAQWQRNQKADLIKNRMVVSAITVLMILWMWGMILSLTHQL
Ga0214239_10006832	F074309	GGA	MTVFNKNSLTQVSGFDNPILSGELVWEQKAFWNLFMTNDAGVLPLTGATIDAQIIRRVLTNVIDTRNGLTFTIGDYTPTPTPITLTVTNINYTGGSFTLVIDDSAWGLMATDPGLDIADPNGIGYSGRIKISFPANGSTPAEDIIVFLFFIVRSDGIVVE
Ga0214239_10006837	F008619	AGGAG	MAGFQNIVEIQQKMNVNNRRTVGQQVSRSGQITVAQYLTTVPWVFTITPHNFLYYPQVRDVIQAIDNLDRQLPDYITFQSNDLKWFTAMRGTATVASLSGTPTPNSQTINITSNGTLLAGDFISINGYVYKVTADSAGSVININRPLIGSPTSTAPVLLGNNCSFYVLAEQLPTYTLNPMTNGAWVEWSGPFVFREYITG
Ga0214239_1000687	F079411	GGA	MAYVMSGMMPMVNLKNKLVSLQLKNHFALDDLRMGKATKNDIDTLISAFNITEALAKQKIGDEYQQEIKAAQDALYECAKRGVEMNYRFIVKGPELKAINFVMQLHDEQLKAATVKDIEVATNYVNQCLTQKRARPILSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214239_100068

Overview

Ecosystem & Geography

Associated Families

Sequences