NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214194_101290

Scaffold Ga0214194_101290


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_101290 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2907
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015440Metagenome / Metatranscriptome254N
F015585Metagenome / Metatranscriptome253N
F017436Metagenome / Metatranscriptome240N
F017786Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0214194_1012901F015585N/AMTKFRLHLYSKRLRIKYRFVKLKEIRMSQKNTESNQRLIKVINHCSRVAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGFSEEEKFYSSPW
Ga0214194_1012903F017786N/AMDKGVKFVMNREEMKSLSVKQILMAKEKLEHGEHVLLVNEIFISPISFQNAMEIVRNIKEKVKLRESELQF
Ga0214194_1012904F015440N/AMEGTSENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSDQWTQEMLETHIFIVIQQEMDNILKVLNPKITEPLDKNQESTIRQEWTKVLSL
Ga0214194_1012905F017436N/AMDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.