NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214194_101049

Scaffold Ga0214194_101049


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_101049 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3386
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048095Metagenome / Metatranscriptome148N
F091313Metagenome / Metatranscriptome107N
F091933Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214194_1010492F091313GAGMTTQSNDNSSTPQYRLIDGRYKIVPQFIQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSNDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0214194_1010494F091933N/AMERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSQGPFECEVVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI
Ga0214194_1010495F048095N/AMSQSDTQKSFQDGLNTVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFVLKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
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