Scaffold Ga0214194_100744

Overview

Basic Information

• Taxon OID: 3300020686
• Scaffold ID: Ga0214194_100744
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4232
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044873	Metagenome	153	Y
F054028	Metagenome	140	Y
F079523	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214194_10074411	F079523	GGAG	LVEELWDTAKVIEHLGININNLRQLQYRRTIAWVKKEGKRVFYSADDVKAYRKVRESRKAVK
Ga0214194_10074412	F044873	AGCAG	MNPMIIERDVITIADIDEAIAHLAVMLKDRYGNRLTHQRKAFLMSEMDSLLDARLEALDGIANGGDREFDSRPK
Ga0214194_1007442	F054028	GGAGG	MKLVPTNEKITIKWFAVLSDGSQMRNNKGFIHNAWDVVCSCGWESRTGGAIKAAVQKDVDRHKWLVHDYEWSYANKVGA