Scaffold Ga0214194_100625

Overview

Basic Information

• Taxon OID: 3300020686
• Scaffold ID: Ga0214194_100625
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4746
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F019949	Metagenome / Metatranscriptome	226	N
F023520	Metagenome / Metatranscriptome	209	N
F024962	Metagenome / Metatranscriptome	203	N
F027744	Metagenome / Metatranscriptome	193	N
F028417	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N
F050893	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214194_10062512	F050893	AGG	MEEIRIRIGEIERLVVLLLIQKEKLEEREEADPSKGSIHKTLLAIKQLNKKLEAILNNERLRTTEELKNGSL
Ga0214194_1006252	F019949	N/A	MYQEKNRYSKRTLRFTDDLLYNNSTAEDEANKEILREELEKSIDKSVVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKMHNLSPLQKARKFSKVYELKQKIIQINLNWKISDSFHLKKYKILTLLDKINVKEEYNSVANEEIYQQLINEVETAKGTNSTWQLDKELIIIKKIE
Ga0214194_1006253	F028417	GAG	MATNESLDNKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQNPKFKFINSYNDYIFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTSVIEFINSTLSASASK
Ga0214194_1006254	F016494	N/A	MSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDHSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQLS
Ga0214194_1006255	F031075	N/A	MSQEKPTSVSETANRKENSEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRKIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0214194_1006256	F024962	AGAAG	MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSAENITGLDQLLSSKIIDTLEEYLEALEETNIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSIELCRRNNWIAEMPKDD
Ga0214194_1006257	F023520	N/A	MATTKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDGIDTSKEWSHQDNKSKFIEIKQAMTELRLCYPLWKLNRYDIEKYSTCLCPNCDSIDIAGGKTLEKLGGLTLEL
Ga0214194_1006259	F027744	N/A	MNSIVRESKNKFYEPDISNTGQRVNPELPLTIAERDAVARGVVRFNNQRQYRKRRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVGLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL