Scaffold Ga0214194_100398

Overview

Basic Information

• Taxon OID: 3300020686
• Scaffold ID: Ga0214194_100398
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6636
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012455	Metagenome / Metatranscriptome	280	Y
F052985	Metagenome / Metatranscriptome	141	Y
F054522	Metagenome / Metatranscriptome	139	Y
F074868	Metagenome / Metatranscriptome	119	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214194_1003981	F074868	AGGTGG	MTTLTNIGLALNIPATLENRIIHDFNNGGCTSSYGLSTPQRIALLKILLGGNAPKCECIHCL
Ga0214194_10039810	F052985	AGGAG	MAKHPPVNSAQWHSVFADDACKIWQDGNDDIFFKVAIKGQRVKYFYNETAHSDVSRYCADELGISYWSVLN
Ga0214194_10039814	F054522	GGAG	MVITLQVPTKAQMGYGLGKCIQYGVEYNVLNDLQVELTSADEIKLTKMAVAFQGKLLDVKQTEYVAGDLPKFEVQYARTNRPIKTTRRA
Ga0214194_1003983	F095359	GGTGG	MTIKIGGLGQTISAYCPVCSEKMTHMCIATLGTGRTVRYEWQCQPCELSLKSDSTGYAHLLTEMAYYV
Ga0214194_1003985	F012455	GGAG	MNKVNRVQELRRSNAATPIRNKKKYTRKNKYKNKFDN