NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214194_100228

Scaffold Ga0214194_100228


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_100228 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10167
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y
F016499Metagenome / Metatranscriptome246Y
F048757Metagenome147N
F051683Metagenome143Y
F053035Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0214194_10022813F015062N/AMKKTIRTKHRIKASTPRLSDEDPDPIEQDDMESISAQLIEGWLPWDPEDINDIRKLISNNMPQKQHFVLEAFLDGLNYNDLHVTEKYWRYHFAKGVEFIKKELGL
Ga0214194_10022814F016247AGGAMNFIIEHKVKGHYVMETLRGVEDIDTSMYKDIMGIWVTDSEEETQVMENELKEMRHARSSQSA
Ga0214194_10022817F051683GGAMMIEIDDDFTDDITAANLAQSYVSIKDMMKNGTHWHEDDIVAWEELLPAIMIVGSWYSIDFPSEIKKAKKAGKKK
Ga0214194_10022820F048757GAGMNLKQLLKRAGVSSDIIAEVERKAKRTTAEQEIEHQEKAAAMAKMMLNDMMPHLHSALNKTPPSKPKKTIIVPDDM
Ga0214194_10022821F053035AGGAGMVSPFELRFSIFNAAKDLMIKQHEANMAAWEVLNKTTKEAAELAPSFPTTEEIIDKAIEINTFISGQTTKELASVAKKLSGVSVIF
Ga0214194_10022824F016499AGGAMVNQHAKQHLLKGGSVAAKKAPPNKIYFTQEMADTILELGKQGASQKAMYAAINISKATAARLKKEDPFFAETIDMATVYGQAFWENLMISNVDNKAFNSRIAEIALRGQYPEDYRERMDIKQDVKQEITVDFNKEIASLISALKS
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