Scaffold Ga0214256_100051

Overview

Basic Information

• Taxon OID: 3300020685
• Scaffold ID: Ga0214256_100051
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21204
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004517	Metagenome / Metatranscriptome	434	Y
F007848	Metagenome	343	Y
F022156	Metagenome / Metatranscriptome	215	Y
F040482	Metagenome / Metatranscriptome	161	N
F053781	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214256_10005112	F022156	GAG	MGDLDKEIVKEAIKEWLNERVTQFGWFSLKTIGYALVAILGYLWLITHGFEPPK
Ga0214256_10005123	F007848	GGA	MKDFLGSCLLGTLLGAMVGYGVPAKAQTYQVNNGGTVQIQGNTAQFVNSMGVTTQTATIYPNQVIIQTPNGVTTSVIGTTLYTVPPSPPTPMTVRVLQ
Ga0214256_10005130	F040482	N/A	MTWNLRLVNMSNPYEDYFEIREVYYDTMGKPIGHSNASIGGEDRLEVDRYIELAKLALDKPILKFADNEDTSKDIE
Ga0214256_10005134	F053781	GGA	MTLKVTEEFLILKLLCKMYDEALKNANATQMLEISVDIAKSSEKLEQLTVDYINGH
Ga0214256_10005141	F004517	N/A	MKPMDHKYKKENALLRNHKETTLEKNQADRIARRKLIANKLKDLDKEVK