Scaffold Ga0214253_105284

Overview

Basic Information

• Taxon OID: 3300020681
• Scaffold ID: Ga0214253_105284
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1349
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086581	Metagenome	110	N
F094801	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214253_1052841	F086581	N/A	MSYDFDPVKYGVLWQKVEGYETKFNDMSKKMDKMESQLEELCALANKSRGGFWMGMAIVSAISGLISFIAGFWHAK
Ga0214253_1052843	F094801	GGAG	MDGIKLSTDIVNAILQYLGNQKFVEVAGLVQAIQQQAQAQGAQPAEAPAPAETPAETPAQ