NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214253_102574

Scaffold Ga0214253_102574


Overview

Basic Information
Taxon OID3300020681 Open in IMG/M
Scaffold IDGa0214253_102574 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2428
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F014823Metagenome / Metatranscriptome259N
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N

Sequences

Protein IDFamilyRBSSequence
Ga0214253_1025741F013499N/AKGRKETNIRTFPSMSEALKDIRTTVSGIKGLVMMLQAYQRDLAGKGEPDPSEGSLETARLAIDQLKEKIEAIVGPEEPTGAEGFEVEIHESEEQSQT
Ga0214253_1025743F022867N/AMELDLQIREQLTSLASNYYNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDGLSEILRHTNDVTPDMAPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNSPH
Ga0214253_1025745F021930N/AMSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETVDGIVEIEKSGNRPSFLAIAEKLAVQLSVIEHIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK
Ga0214253_1025746F014823N/AMSKKSNKSKDGTPTLIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYKQSRSEKEIENLQPIAVAEEKVDLPESLEIL
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