Scaffold Ga0214253_102356

Overview

Basic Information

• Taxon OID: 3300020681
• Scaffold ID: Ga0214253_102356
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2619
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F028153	Metagenome / Metatranscriptome	192	N
F032254	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214253_1023562	F032254	N/A	MCVRKVGYRVAEKRFVAIPRLPPPSDKDAMSKFVVDTLCSNRACRYRQDVPMVQSLAQCTRSCGNPSCFYQSCHVVLVLDPSPKLFRDVLDVYKG
Ga0214253_1023565	F008745	GGA	MSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVQEVGGILEEAYRTSHQLFERGQGEERLLGHLQHKLMTAIDELEVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE
Ga0214253_1023567	F028153	N/A	NCEITEEELCFVRRLVNRRSFPTTKRLDDWLRIMEEVVKVLGILYRSSFRLLESNNFKDESILDLLRTVYISAMAEVDVVKGERT