Scaffold Ga0214169_100531

Overview

Basic Information

• Taxon OID: 3300020677
• Scaffold ID: Ga0214169_100531
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2911
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046173	Metagenome / Metatranscriptome	151	N
F047014	Metagenome / Metatranscriptome	150	Y
F073069	Metagenome / Metatranscriptome	120	N
F101040	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214169_1005311	F046173	GAG	MLSLKDREIYEIIIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKHILEQYLTGKSIGVQLYIKEIDTFYKEKLIVRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLINLTKLLNYITEKQKEQE
Ga0214169_1005312	F073069	N/A	MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFVERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY
Ga0214169_1005313	F047014	AGG	MSIQVNEARDQWIRYLINSTIAWVEAKRDKEAKHRCAKIINIIQKLKKLDQQWYLGNSVPERNLIPIQHNSQSSYHTLQGA
Ga0214169_1005315	F101040	AGGAG	MNTEFFRARLEEVRSNLELTRVDKRKTLENLLERNLTQELKEVLRSNLSLLLQAEEKYLELERQYEILIRCGRH