Scaffold Ga0214169

Basic Information
Taxon OID	3300020677 Open in IMG/M
Scaffold ID	Ga0214169_100386 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020677 Open in IMG/M

Scaffold ID

Ga0214169_100386 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3782
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3782

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F067430	Metagenome / Metatranscriptome	125	N
F076862	Metagenome / Metatranscriptome	117	N
F086589	Metagenome / Metatranscriptome	110	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214169_1003861	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDIRHSLNEIGQNSQKGDGDEIFLSVNTDV
Ga0214169_10038610	F102512	N/A	MSVRKLIDEALVTYIRREMCDNIVMLCTEMKTFAENLEKFPVEKLLLLKTEIIRVHNQIFGMMEEVKESFLQLV
Ga0214169_1003862	F045530	GAG	MIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRRHVDEEGPPRKISSGIYTRQKIQLN
Ga0214169_1003865	F061527	N/A	MSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0214169_1003867	F076862	N/A	MSDPSHNSTVEKITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSHKTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
Ga0214169_1003869	F067430	N/A	MSTSSTDQTEDNKEKLVESIEAIFGLLTLLDNYCKILKDKGKPDPSRGSIETAKESIVEMAKRIKEVLEIENTKIDLTNGKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214169_100386

Overview

Ecosystem & Geography

Associated Families

Sequences