NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_100361

Scaffold Ga0214169_100361


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_100361 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4045
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F021046Metagenome / Metatranscriptome220N
F024248Metagenome / Metatranscriptome206N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1003611F016117N/AMDSIHIELSPRLGLLIAAWRNFFTRLHNQSILTDNGFQYLLALLVDKLQEALDSEFHPLVLDWLKETLPKVMRCRGTVNLINQVPAHLWTSDHIFRHNYFVCLERRASRLSISS
Ga0214169_1003612F024248N/AVEYGSLPRVPTGLFCCGRSHLYSPAQVVPAPTSFPSSRPLQTVDPGLIARSFAVPLIQSAYGVPAVRPPILRQNALRSLSPEVQVVPPGDSDYQADEAGRVVSPRPSTSTAANGSSSFW
Ga0214169_1003613F073067N/AMEPSVRAAPTPTRPGVDERLPRADHLPRSDEAIIPEQLPGVELLAAGACINPCHERTNVFGKFYPFNRF
Ga0214169_1003615F021046GAGMETNFVTNVHEVVYASFLSKDCPTNEVRILTKFYKVSFVVFKAGNVSYNAIMAANTIITDFFVSHHRLFAREIALEFVENILTLLFSYDGFWDFVNRLNIHFFYLSYRPQILQILSYHMSLTYGSEHYLEVYRLLPPYVSGAEDFSRERGKFFCFVTKRKEFFSLSFSNRFLITELF
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