Scaffold Ga0214169_100339

Overview

Basic Information

• Taxon OID: 3300020677
• Scaffold ID: Ga0214169_100339
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4261
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029723	Metagenome / Metatranscriptome	187	N
F032529	Metagenome / Metatranscriptome	179	N
F036545	Metagenome / Metatranscriptome	169	N
F051885	Metagenome / Metatranscriptome	143	N
F061798	Metagenome / Metatranscriptome	131	N
F063374	Metagenome / Metatranscriptome	129	Y
F070906	Metagenome / Metatranscriptome	122	N
F078638	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214169_1003392	F070906	N/A	MTENIERLLVNGSNEPNGDETSEFIKQRDHHTTEITKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWDEECLRLRYINCTCLDEGTPV
Ga0214169_1003393	F051885	N/A	MSSSSKVEAPNASSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVKDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVTSDMKHLSLCPK
Ga0214169_1003394	F078638	AGG	MKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAINTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKDEPSSSSSSSIEDLD
Ga0214169_1003395	F063374	N/A	MKEKILKFKEEVLKTYPLKSRHTLKEMSKKSRRIDNSDLSSISRYTLRIMSVDSERTSRFNLFPQIMESYLRQNRFKSISQKPGEMLRQFSRMNENELSLYTEISTKIVKVIPEESPHILIK
Ga0214169_1003396	F036545	N/A	MSNMTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS
Ga0214169_1003397	F029723	N/A	MTSSDSSIDRQKVLMTPMQLSVYWRKIAAEALKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQITMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0214169_1003398	F061798	N/A	MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEKGNPSKGKTDS
Ga0214169_1003399	F032529	N/A	MAESRRLIDVTDTERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKESTSSKETSSENTSCEVTSSTDTTFDNEAKK