Basic Information | |
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Taxon OID | 3300020598 Open in IMG/M |
Scaffold ID | Ga0180218_1000458 Open in IMG/M |
Source Dataset Name | Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C Kraft BY (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38506 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (76.74%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Emeryville, California | |||||||
Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036958 | Metagenome | 169 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0180218_100045815 | F036958 | GAGG | MSVILIFAGFVLVGDTLAVGISYLVEQVSNSISLMVFLALYILVFWISWKLAVQVTERYVIHEH |
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