NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163149_10077105

Scaffold Ga0163149_10077105


Overview

Basic Information
Taxon OID3300020596 Open in IMG/M
Scaffold IDGa0163149_10077105 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.G1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2433
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068307Metagenome124Y
F075701Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0163149_100771051F068307GGALSQLSSKTMSGTTGTASTAITLSPVEEKKADKARLLTALVNVCGMPHGHYKTHPIVLALKLDGVTRFNVDFIHMTAADIDGLQCKKGGALVPLELNFKMILRAFLAFYHHVSHKQRGGVNVLDPTLSVQFKNYRNSEYDPTKEIT
Ga0163149_100771053F075701GAGGLDKEDKYNEDKAKLFRIIMTQNPPEMKDKLEAQSTELEKLEDDNDVIGLLDTIKELVYNAGGVRNKFVIMQSLNRTLHGRGTPQRPNESLNENGKRFIQQVEVVEAVWGKLVPPCHENDNKKDKESARNQCLASLFLGGTDQARYKAAVDELNNNCVLSKDVYPADVPVAIMVLTNRRGHGGS

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