NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163149_10044424

Scaffold Ga0163149_10044424


Overview

Basic Information
Taxon OID3300020596 Open in IMG/M
Scaffold IDGa0163149_10044424 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.G1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3493
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014821Metagenome / Metatranscriptome259Y
F057770Metagenome / Metatranscriptome136Y
F069529Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0163149_100444242F014821N/AVSALQTEAISPEERALPLFSRRALKRLPTWDLWHKNELEQLDQMTALGMFGSPIKLPEGGILMRFHWQYRIKVNGKRRSRLCCDGSPRAAPEVHSTTNTYASCLEHPVFWLFIALCAADNLTIYGGDAKDAFAHSPGPSMPTFMKLDNAF
Ga0163149_100444244F069529GAGGVPAETLTITIPPFTTSEHPFFHKDDVTVKVVCESDMYGFELSEDDCMKRVYISGLKKDGRGTKGRRSCNTMCSSERASRRKYRGAYIRAINDEEIMTLDQAKEKFAELRAKKVESFTMILAREPKPSKAMMWRAYNELELPDFDLNDNLGEDYFAPGEDLKGDLSMTFSQKMVELGTDYVPAIGTKISKDFGSKGYFEGEVVSGPHNVTVERDNMVVWKVQYEDGDREEMTASEIAHWKAPVEEVQTSKSKPKLKPTRPKKMIATKPSGDWSEELEDALPKPGKDASAPTHLRRSTRLQQ
Ga0163149_100444246F057770N/ACKSGSLLLFRTTRGGLCYTRSAVPPMPTAEGTAEMSLDAADKAAISMVEDHPKNSHQHELKLHTLSAKAERLLWHQQLAHYGNEQLCRAHMFSDGVPEIRLGKDSALNSCPVCLAANMKSRNRGDGETRTAAKPGQGLSLDFLFAGQHSKHATNPEQMQINDYMGIHGGTCYLLLCDHATERLDGAC

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