Scaffold Ga0206126_10118123

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10118123
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1291
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F019393	Metagenome	230	Y
F024303	Metagenome	206	N
F048575	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_101181232	F013822	AGTAGG	MGMTEKELLRKNVRELQLQLRDAHIRIKELNEKCDELNKRLGLEKEFTTSDGWAMPVENPDATHIKERK
Ga0206126_101181233	F048575	AGGA	MTALQNSIILDEEYEYEVSVVDLWESQGIKEPYDAIAVAMNTLAYPNPNVPDEEIEEHLSELWEERWHHYYV
Ga0206126_101181234	F019393	AGGTGG	MYSELKTYTSIPEFIQAHEGLWHMLDAKYKKLDKETVLIDNTKWKLVKGNMTCLTK
Ga0206126_101181236	F024303	GGAG	MTDNKFTNWLHKELKQQQKEKETIMAKAIKKDGAMILDEAQKKHLLDLFNAGNDFTQSYRESGIKYVTAWEIEKVIDLLDDMKELYGIVVKRSPEPDNEGNYYPCHWADHVWADDSRAWKRED