Scaffold Ga0206126_10094684

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10094684
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004907	Metagenome / Metatranscriptome	419	Y
F006365	Metagenome / Metatranscriptome	375	Y
F047915	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_100946841	F004907	N/A	SSDRAEYLRRIKETVAFERKFLQAENELVQINKLTECPKNDTVRKYMTMNDKIAEGMVA
Ga0206126_100946845	F047915	N/A	MKNMKAIGISFLGAMWFGAYTVGPVMVFLWAIGFITINI
Ga0206126_100946846	F006365	AGGA	MPKTEIPPYDYHVWFKGSKKPIHMYGMHEDHIRWQSDPKVPVKIKRIFIKEEPLTKSEHLGPKGCVVNQPADYDRGFKVLRAWIDENGGPPESIRKKLRELFIDYDRAPQKTTRYS