Scaffold Ga0206126_10031112

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10031112
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3234
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013081	Metagenome / Metatranscriptome	274	N
F043091	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_100311123	F013081	AGGA	MDLIKIVKTIEPEYKNTDQCINPLPNEVELLLDNEDYLIEVNLKEDVLKTNFWQGEEKYNASSDEIDFIYNYLEHHLLNKIEETKKYYNEHNYNYQLWN
Ga0206126_100311125	F043091	N/A	MELTEKKLEKISGAILSSFINLHLLEDADKIGLFRQRVRNNIRRTISDLKDIEINYYNKIEEVDEKELGDKLIANKLIFIDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINNGAEQIDE