Scaffold Ga0206126_10023934

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10023934
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3930
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F053660	Metagenome	141	N
F054042	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_100239345	F053660	AGGAG	MRARKYEMKPTPHAPSKHHPNTTFKKWVGDRTDLGLVKGETYTWTEFGAAVGIVASSMRGRVRGAKEVSDCHMWKAGDRKPKAEWGVATITRCETDADKLSQKYLRMSL
Ga0206126_100239346	F022391	GGAG	MTQGDYVKINSTNEVDAKIRHLESRIREWDYQTALTIKLEPHRDPSSLSQEALFNIWCREIADAMKPKTPAADAEAWKLWLKQKYIGTYAVKVGKETIEGQVYATPKAKGKMSTFMHSVLVFAEDKLRVRLSLPMNCEYLRVRKNEQAKESKQKAKEEANHTAGSREGSSATPKARSSKGEQQIGLL
Ga0206126_100239348	F054042	GAGG	MIEEQTPFIQIVFEEIEEYGLYDLKLKLFNLLEAAMYGQAGKARKEIDALWLEIQDYKAELTIPPDERLLALHHPTMSV