Scaffold Ga0206126_10011978

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10011978
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6635
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_100119782	F080057	GGA	MLTDEWKNIVTKGHKLEEFTAVSSMTQYKIQVNLEILEGCSYMCPGCFVKRKGNWNPNSIATFHSLAYELKDRDDIVLDDIVIGPTDFYGAQNLEEIINNQRLADAISMIPKDNRNIQHNCSILGSLSEKDIEGKIKAIENSPLGKAVEAWDVQIALDLNRLMNDQKYLDALDKRVNTFKNSSLNFEISMATNIVQGVEDIIYEAIEFVRTRYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSKLSIDTKRFKEKFHFLQGDVSHKVFHYSVLSIYHGDMYLSPFVYENAQIHTDDFKVDNGWLWLPDADISDYILDKKNEIVQRQIKESSDKECGSCKYLNICANRMVPMIMDTVFKGRKECILNKEVIALFDDEIYRGCS
Ga0206126_100119784	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLEDIINENSPILAFVSTLIDGDLERFVKYISNNINIDTEIEIGIATNPYNFFSIPYLERTKKALAYLDENLEHEITYTFVVNIRDYNLDYADLHAYAIDKFDTILDFVPSVSRSHKAHIILATLDKFNEYFNVLSRDSTLNNIMVDHSHAGMNYTVLNYKKGEWYLSPFMYENMAIYDDMFKVESLADATRITEEQIERAKGTECEECPMFFSCYNRKIILLRDYLGVDRCIAPKENMLNNIHNYNGPAQTMYEWDGYSVENDKNGYRKKFLVTKDDDPELKRIRNISYVSKT
Ga0206126_100119785	F042905	AGAAG	MITKLNSTYAGYYNYDAEKSPTNIDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGSYHPDEITIGPTDIFDAENFSEIMNHPYMEKLYGISGVGFTSTLLQPYSEVKEKLAKIWSLYKNIHRVPDIDFKIVLDIDKYLDNDLDEWYKNLELFKYGSVQFRVNYHKDVFKRIGYNDLCQKVFDDFNAPIIITPSFLTDRNARGKVDQHLANFRRDMIEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYINPFLYDVIIQRTPQFETTMDNNTLYDNIDYAQQVDDCNGCQYMMSCAERNIHLYMESRGLENCVALKEYMYASH
Ga0206126_100119788	F040106	N/A	TLMTMQKSYCKQMRYSGPESLAPSDATKFDVLIQMEVLSGCEQGCLGCFVDKAIDPEVNQQIIDRAKELADGVKRVGGNLREFVIGPTDLFSAKNTKDILTNPTVQAIMREHTGARIASPAKFDKASMEKVREIFAILDDLDAYRRDMVIEFIMPIGRINEMLDDDEYYNSVMEKVEFFKNETPKMMDWSWTLQASNVVGKQIDKEKYNRLTDRSFNDFGTIMEMNPAFARAPNQIVQRNNLFSWNRFLESVIDEENSKQAVMSMANLYFVGITIVPGEHGPTTHLNVMLHEQAFFLSNKNLDVTGLSFEEILQRKNELITKGINRSSKVKDCSDCKFAIACANRLVFEAQESLNIDGCVLPKEILKHYNPFDFTWNDDATQYKMKDGA