Scaffold Ga0206126_10006334

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10006334
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10528
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F037221	Metagenome / Metatranscriptome	168	Y
F039623	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_1000633419	F037221	N/A	MTNWTTEQLKNLKEVTNHKVIYDGYEFVWMSKPDNIWSRHYISNFEDYNKPMSWIHHHTYNWGKEYKQRQEKYLADMRKSLDIDVKIREISREAKIKTKEKVVEILKLKPTLNNQEVADILGITIRTVRRVKNS
Ga0206126_1000633426	F001728	N/A	MNNIELRKTKKDHYKLLLNGTDVTGEQERSTFRHIIQVIDNSINTGI
Ga0206126_1000633430	F039623	N/A	MELLDSNNTITFKKFKCLRTNQIYEVVQTECTGRYINNAIDTLVRSDGLRKSFARAELRTRFSNIEGILEKDYLTKKKKKR