Scaffold Ga0206126_10003753

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10003753
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15185
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y
F064103	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_1000375310	F017048	N/A	MTDYNYQPSKSSLRADTIVSMCSRSLLDFKMSEIPGMGPASIDKFKDHGIYTPAQIVAKFLSFVDSADVSAHDVCEGFYNWANPIMGKANTHNLTFALANYAGEHGLFNFE
Ga0206126_1000375312	F031650	GGA	MSNMSEEEFNQLKLEYTNAIPEGDAIKAQLKSHNKEQKERLNNIHSYMRENNLMSADLGGITFEREEKTTVPSVSVKTLEEIVDNPAVVEQYKRDYAKTKESLRVRKPKRQRTSTSDE
Ga0206126_1000375318	F064103	N/A	MLKWILGLFFFIGIVLQVRNFNRYHVERKRKHNEAQVYLDSDVCTDAVTRSQLGTFNLCEKADHILNESPLEAAAYDILNDWYPCGHGRCDGTLDWLASNAHWFVMIIVMVGMMIYYKWVDHQRDILFTRMSLPQLIKNKIEHVD