Scaffold Ga0206126_10000008

Overview

Basic Information

• Taxon OID: 3300020595
• Scaffold ID: Ga0206126_10000008
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 319099
• Total Scaffold Genes: 299
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (20.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031650	Metagenome / Metatranscriptome	182	Y
F049219	Metagenome / Metatranscriptome	147	Y
F070820	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206126_10000008192	F031650	GGA	MPQTSADEFDQLKKEYTDAIPEGDAIKAQLKSFNKAQKQRHAKIYQYMRENNMMTADLGGVTFEREEKTTVPAVSLKTLEEIVENPAVVEQYKREYAKTKESLRVRKPKRQRTEETSDE
Ga0206126_10000008205	F049219	N/A	MIQAKSDKFICDRLNTLEKGVNVLDNRVAQLDDKVAHVIQMNSEIMIQSNENFREMRRTLDDHRTELKKSIRQIKGNFTTKCQLVMFAMGLGTWTLFMTWVMWG
Ga0206126_10000008214	F070820	N/A	MYQSQKRRRIKPFARPTSFDINVVFDIRHYQSVKYGNVIDPYFPAHGNDEAYHVMEGELLMTTNTPQVRRYGDHQMHVFSFANGLKANGAVLNASSDAAPEKSAVLDGLKYAGVAVTEFAPERDIFEQGFVMTMAGLNTLFNNGNSIIYPGDVICADIPATAGKGARKNRALQTGVPREKLQFIVTPLRDLLAQGVSERLASRFIMGTALSYSRPGSSVDVVLHRCNTIVKREVSAVADLMGAEGKKPGTKATARKTKAKK