NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213496_10067843

Scaffold Ga0213496_10067843


Overview

Basic Information
Taxon OID3300020590 Open in IMG/M
Scaffold IDGa0213496_10067843 Open in IMG/M
Source Dataset NameLeaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Above-Ground Endophytic Microbial Communities From Plants In Different Locations In The United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6622Long. (o)-119.6197Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017428Metagenome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0213496_100678431F017428N/AVTVDIEGVSTLADFQVIDIVDDSNPYPALLGIDWNTDMDGLINLKKXKMIFEKKSLRIIIPLDPAEGSRYTKPVHNYESDDDLDCIYKIISXDQDWENPTTDG

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