NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10087671

Scaffold Ga0210401_10087671


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10087671 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F084509Metagenome112Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100876712F084509GAGGMPSYGNVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGAISVQLQTADTDIDAAYIQEGAAITNVNTTNVTRAEFPDVVAKFARILIATLPNNVTATAKISA
Ga0210401_100876713F000781AGGCGGMLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALNVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLPRGGNGFGVVPGARVVKQTVL
Ga0210401_100876714F106044GGAGMPNLTSNATWDFNPGDPVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPLVTLAQTDNATITVVVTI
Ga0210401_100876715F007488N/AMKIRAYEETDLEALREIHARQGFGYAFPDLGNPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKKFGNRLTRLGWVRDDAWTPYCRKLR
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