Scaffold Ga0210401_10069786

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10069786
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3310
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006125	Metagenome / Metatranscriptome	381	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_100697862	F006480	N/A	MRRVFLGGLALLFCGVIAAREKPEPLVFVFVRVDREKDLALLRPMIAPDIGVQLDSRPRSLDQGTVLRCTSFVREHSAIVEGQLAQVTDLLLDCGDRKFVVKTLDFTPERK
Ga0210401_100697863	F000512	N/A	MIRVLRETHEAPENAAHRLKMAGGINRLGEPNYRAVWGWNRLAWIGGKFEEHDSATGSLLREVVELRQEPKYPAVNRWHIERWIAPEVYGSPRLWYAQTIERENGVSIPALGPYPSRGEYEHCFTLETPRGDFLQLTPTVAEHIARAIEFSRHVARSKKRRSIDDRERREDRAYDAWAYDKLDDAVPAFHKQPFVTVA
Ga0210401_100697864	F000739	GGTGG	MKRLELKQLEVWIKGIVAAAISGGAGGVLTGLAAVGIDPQHFNLQTGMGATLRIAAAAALINAVIGVAAYLQKSPLPNDE
Ga0210401_100697865	F000696	GAGG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVALSVWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSTAVRREQQSARRRRPFSARSGYTPF
Ga0210401_100697867	F006125	GGAG	MPITITLLPSNEDGSGSNLFYAIGTLTFSGNYPTGGDTMDFTTVADKLPSTQIIQVFADSQNGNSGYYVPVQGTALNNWKLKAFTGGGTELSAGAYPGSVTGDVVQVTITARKLQ