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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020583 Open in IMG/M |
| Scaffold ID | Ga0210401_10058138 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3645 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F006480 | Metagenome / Metatranscriptome | 372 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210401_100581381 | F006480 | N/A | LCGVIAAREKADPLVFVFLRVDREKDVAVLRPMIAPDIGVQLDSGPRNLEQGTVLNCASSVRTHSAIVEGQLAQVTDLLLDCGERKFVVKTLAFTPKRK |
| Ga0210401_100581382 | F000512 | N/A | MIRVLRETHETPENVAQRLGHAGGINRFGEPNYRAVWGWNRLAWIGGKFEEHDPGTGSLLREVVELRQEPKYPAVNRWHIERWVAPEVYGSPRAWYARTIERENGVSIPALGPYPSRGEYEHCFTLEGPSGEFVQLTPTAAEHIARAIEFSRHVPRSRKRSSIDDRERREDRAYDAWAFDKLDDAVPAFHKQPFVTIL |
| Ga0210401_100581384 | F000696 | GAGG | MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTQDFLEMVDVTQHGGLPSRAQDVTLSVWEWRADGIYFLGATQDTQIRLRYSKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |