Scaffold Ga0210401_10020642

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10020642
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6327
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001118	Metagenome / Metatranscriptome	773	Y
F007481	Metagenome / Metatranscriptome	350	Y
F101759	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_100206422	F101759	N/A	MRTGNLAAVMRTMGHRDVKTAMHYQHPELEIVRAALDTVRQSLK
Ga0210401_100206426	F001118	N/A	MGVTVELENLGDAQLCREIVARVEHAFSDKKGEWRVSIAGSRESESWEMRVAGPSGFERTYTLSRAAGEHTPEAIRRLTLQLVPANPS
Ga0210401_100206427	F007481	GAG	MPPLPNANDRLQECVRRTLNKIKKPSTAEEITELLNRELGPGDRPFQTKEVAAWLRDAGDTVLHLYWLGSRPRR