NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10014038

Scaffold Ga0210401_10014038


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10014038 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7767
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F000465Metagenome / Metatranscriptome1105Y
F000540Metagenome / Metatranscriptome1043Y
F005065Metagenome / Metatranscriptome413Y
F014401Metagenome / Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1001403813F000540N/AMVKRQTARVLPKLTETEQDLLSHIQHGYQLETDSLGGNPVLQSLKDDQEIRALSANRSTIKAMEQRGLISPGKGHDPLIIVRRLQKKAQ
Ga0210401_1001403814F000072GAGMDVERIIDDIEQLQEMFEAADIRPLSASDISAANRAHDEKLARSPWFRLWQSYGVCCRTESPVFRLGETES
Ga0210401_100140383F005065GGAGMDANHISERLSSMRLEISDLRITTARYWCKSQHSPLDKSAFALRKGRLLEIKRELSDMMKRCA
Ga0210401_100140384F014401GGAMKTSASGSPHKRVWAQFYKAALFESDANKVSERIAEAEKALVTRTRELIDSAADNIEEEQAVDDAMYALHGLRSTLKYKANAKNMPKELAA
Ga0210401_100140388F000465N/AMQMKAVANKKGAEPRESRADFQEMGTLRCDGCGEEFVISHDPAVADKRVAEKQAGWLEKVLAEEHERDKKHPDRIELPD
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