NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10006302

Scaffold Ga0210401_10006302


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10006302 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12084
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F003384Metagenome / Metatranscriptome490Y
F013201Metagenome / Metatranscriptome273Y
F021169Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000630212F000549AGGVQPLPQKKVARAYRIEGSIVLYRLAAARSLSIAGRPLVPAEPRWRMVIAAPLFLRTLLRLVFLCPHRHKGPPMTLRESIPSNRPVRRTFHGQGSYITCLDCGQKFAYNHMTRRLEDFWGVHDLKALAGVRRRVDGFFSPFRNLAACVGRLNMGTPMAELVRFAQRLAILTRGQWANSRHSIASQLIPRAKLQQTQTRPENN
Ga0210401_1000630214F013201AGGAVARFYEIRSSNNAVLKRNGGYATQDAAKTAGREDAKKMKNSRQQDRPDIGRVMVGQNAERATRY
Ga0210401_1000630218F003384AGGAGGMKPETMKTTTQDRQATFEEVRLATSPTPDRMLELCHTQGDYCQMDSDLGGIIRYPAEEFEFFAYLSEMDESVSN
Ga0210401_100063023F021169AGGAVVEWKAKRSTLMKGFPTLQEVEKADKEQLARWYRFLPSGENAADQKIMKRIAERFEKLGGMTAELSKKIGM
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