Scaffold Ga0210401_10004213

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10004213
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15060
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002088	Metagenome / Metatranscriptome	595	Y
F007046	Metagenome / Metatranscriptome	359	Y
F036390	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_1000421314	F036390	GAGG	MPPIEILSVEEASERAAPTTVAAKDRIPTRRRFYALSLKDHFRLLLPFLLAGAAGVLARVKYPYWWPANELVYFLADALIVAMILGIAFDVFSAKLLVERISDGLAQTLVGRGLPAEMQGLVRDVVSTDLVRDHYVKSYSFSTPEDGRIQVNVEVRYEIRNYSEAVRDYAPELTAETFFQPEVRFLEYGIAGRKIYTFSDENLASMVEVEDALGVTRVPRSALPALSLKPVKAGEKAACQVTWRYGLTVPEQYCDVTDLEEATLGATLHVEAIPEELEFVSGCDASLHHEAGSQSWYFERAFIAGQHLRAWWFRRKPSTRVSRSRP
Ga0210401_100042134	F007046	N/A	VIIAIEEGPGIFSCEGVTIVVNLHGALIATEIGLSAGTKISVHVHLTDKQSAARVVYVDPENLLHCGVELEKPRNIWGVPLPPGDWEEIAAPEIRL
Ga0210401_100042136	F002088	GGAGG	MMHDPQLARGDICRDPTGLQVMVEDVDIYDYVHFSVIERSDSRGDDAESGQMSQVAFIHRFTKLGNMFANRKAA