Scaffold Ga0210401_10003484

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10003484
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16814
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F011883	Metagenome / Metatranscriptome	286	Y
F023459	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_1000348414	F001083	GGAG	MDINQRQIALSLLEGLREDLMYAHLNNGRRILDVADLRQYIYEQMSRIRTNALVMDGLYGDDNGHGQGLGKSNGKAHS
Ga0210401_1000348423	F023459	AGGAG	MLVTERTASLSWVSVRDRLPFDGHECALICRNPNSSDLRRAIGCRLHGNWEIQDCALANSDVRAWLKLPSTPSSI
Ga0210401_1000348432	F011883	GGA	VTVPEPLPGKDDLEMTMLDANYISERLGSLKQEMSDLRVSNVRYWSRREHTALQKSGRALNQERLLHIKRELSDLMKRCA