Scaffold Ga0210401_10002655

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10002655
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19666
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001457	Metagenome / Metatranscriptome	691	Y
F004082	Metagenome / Metatranscriptome	454	Y
F055935	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_100026552	F055935	GAGG	MGALFILCAIFVGLAVYRSGEARARWQSLRASRTTARNQRNTAWRHAGSAALYVVGAIFFLFIVLKLLK
Ga0210401_100026553	F004082	AGGA	VRRQPVRIVDGRVEGGYTDVFEFICPGCGDNPYVDYSEVPSRLQWLRGPLTLEAALEAYDKHLAPLPGPNGDSAGS
Ga0210401_100026554	F001457	GAGG	MWTYSDGARTVKGYRRPGGTAGAGSWVLVDQGTGNVQGVLPAGEFSRRFRPVDVFADVPRLPGYLGTVTTADGTPLVDLVLDRNPFMLANGPQRAARPHALMVPRRHREGWSSATASELAARQTAMTLVAAWYRSLDGGHVVFCANDSAPNLDYLRDTEATSGILSGSGPDAAITKNPRQDVQHAHLHAFYAEHDRTENHESSALAGHPVIAEGHRAFSAALGSDAVPVERDSTRLAAGLRAAAQPWGGSYCSCQLGVDGALWVMPALGPSQDEVNRRLARADGLQAEPDPTLGGAINLVRPTLADTGRLHAAQRATADQRASFETFVAQRGLNAQSLTADPAP