Scaffold Ga0210401_10002360

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10002360
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20978
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002813	Metagenome / Metatranscriptome	528	Y
F002898	Metagenome / Metatranscriptome	522	Y
F042992	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_1000236011	F002813	GAG	MNHLEVLREKIGCLRAEIAQIQEMNNEYRRAGRHEPQAQVAHGQRHERLQAIQNELAKLSDLGRRVRSVEQMKEQHRGRLHFVKNAS
Ga0210401_1000236012	F042992	GAGG	MKARWSAVLYAFFIVAGLGTCNLQAQQSAIAASVLHIQQTQTTSQGSQNGFPTYLAMYHILDGAKSPAEALSLMGTISLKNYDPTFSEVLWILVYWQGKCPAHDINLSEATRLWSDILKNPSQSDSTFTVNLDFPHPLPMTGCVGLYYGGGPLFEGKTTMSADLNLRYRPVINSDPDTVLDLSGEYCFGQDWGCQNATAIDGEGFAVPYRMQAAGHLLELFGNISDSTFDGTQNFGPLPAGASWGAANDFYLLPGGCGIFAENLNSQGFPNPAPLSTLHNWLPHDALHLASIPLVDRISSGETGEATLQGKVENIFSVPVKVNAGDCVVVIYSRSGNGATDNETQVHALLAP
Ga0210401_1000236017	F002898	AGGAG	MSEAGERRSGFRVVLDFLKRLLGRKPAAPGDPYAYVTAPVRRGSKGRSGAAVAEIEEESFRSFPPRHGG