Scaffold Ga0210401_10001424

Overview

Basic Information

• Taxon OID: 3300020583
• Scaffold ID: Ga0210401_10001424
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27821
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F003741	Metagenome / Metatranscriptome	471	Y
F063894	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210401_1000142411	F000626	AGGAG	MPIVKKAPEMMSREVRLEQPVNELVEDYARFIESSPDHVINAVLKKVLWRDLDYRKWRGERRAGQPGADKPQPVEGPGRI
Ga0210401_1000142416	F063894	GGAGG	MVANALLFTIAILLAYGFWLLDQLKFMARYKAAVFHAYGLWILGFGVVLFVNLFGLAVTVSRRFLLKNTGRKLSHLDKQFHVGHVDMPLPASDEELN
Ga0210401_1000142427	F003741	AGGAGG	MLQQMNQTEARDLEWSCQAVSPMDEPCDSTATFHCGICGRWFCAVHAEDETWHACVLEPGDEGGEG