NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000156

Scaffold Ga0210401_10000156


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000156 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80571
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (55.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010352Metagenome / Metatranscriptome305Y
F014549Metagenome / Metatranscriptome262Y
F015764Metagenome / Metatranscriptome252Y
F016451Metagenome / Metatranscriptome247Y
F079642Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000015617F010352GGAMLKPANLFRMMTEFIFILLGGFLAWVGLSGRLDPGNFNPRGPAWLGLGAVLIYWGARTWAKTARAARTWDRTVAQVGGASLILVGVMMLSLMFVEFRRVGIVFAAAGMILALRGILAAVLSLRAD
Ga0210401_100001564F015764N/AMNPRVTVLATLHVVQGAEKRLGNVHDPMYVSLLNKLMISEGVDFIFEEASGLGPTIAEKLALEQLPFGHYLDIDPSRADRQDFGISSNSSEPNMIGEPPTVAFANWQILDVHAKREELWAERIQQHEFKSALVIVGLVHLLSFAFRLQEAKFSVQAINYANWQRNPL
Ga0210401_1000015641F079642N/AMVPPVHCASHTRLRKLNFRQLRIPTGGTTLKKLTFWQFAALMFFLLLTSPRIIWADVSKQTKDSLDKLLLGKEVKPLVEMPATKEGLDVYFVAPHGKRVDERGLDLGSMSKELKSKGVGVEAQQWETITDVKVDGDHVEIHLGGGGEGRRGANHANKVGAGYLRAGGSRVNFRYLTSVTDNELEPSAFLNFMSRVLDVSRLKMEETARAFPPEIKNAIAAKTVVEGMTYQMVQMSFGDPEQKKINDTTDSTFSETWFYLKDGHRWVLTFVNGTVSKVQVF
Ga0210401_1000015669F014549N/AMPRNDSNLLFTRVDKTMTLQQIIEKYLAIAGGFAFLAPLADFGMERSEVERVFGALDDDYHISRFFHFSQVSGPAYNINGFEQTHISIDEEIQTIL
Ga0210401_1000015670F016451GAGMRSLNFATRSLIATVGASLVPGAAWACPACMVGDPKTAATYFGMTVVMSALPILLVCGLGYWIWRRHS
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