NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210395_10186780

Scaffold Ga0210395_10186780


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10186780 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020232Metagenome / Metatranscriptome225Y
F045388Metagenome / Metatranscriptome153N
F066033Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0210395_101867802F066033AGGCGGMTTQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVIRRPTPPGVIPACEDCDQEFPPADDGEWLLYERADA
Ga0210395_101867803F045388GAGGVRSSQLTDDDLWRVIADNTDAMSVLIEKQFELDGEAGAPDPDTRQKLMLFNVQAIDNYNRQYRDCIAEIRRRYPSI
Ga0210395_101867804F020232GGGGGMAEPSADPIPPDFAEAFAYAVLVYEIWTPEEPARLIEIGSRSYSIIEVCRFVDQFTDRLPERVYLKLRSHMHDHPDGKLKADLAADPSYATAVRCLRGMMERRTEDYKQRGGMKG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.