Scaffold Ga0210395

Basic Information
Taxon OID	3300020582 Open in IMG/M
Scaffold ID	Ga0210395_10009851 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020582 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7123
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7123

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y
F067006	Metagenome / Metatranscriptome	126	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_100098513	F012141	GGAG	MSGERYWVWVVVRLAVGVAIVGWAASYLMTGSGEKEFQKTLEAMKQVHSFRASVTASAGTRHKQMLWEVDCPRDLEHYQWRETDSATGMDMSSDEVHFATDAYVRGSDGSWSKPRYAHEHPPAWFCGALAQGNDNTLMPRISTMIQRGILQKGDKKTVNSVRCQEWLVTMKGAPSGLEHDTVCLGLEDHLPYELTVDWLQLRSSFSDYNAPISFDVPDAVTQQTSAVTSSN
Ga0210395_100098515	F047844	N/A	MTRRLSIPGVAVALLCASTFAWGQDSETPGNSLADLARQTRAQHASTADARSSKAQELVDEMQQEQEAAANAPTGFTNYNAGDYRLFVPYPFSLEGRDNGGAVLLGSRLGITNTEVVAGNPIPIPANIIDSASDSDLLNVVRQLAGLHGTQPYCAAIKQGSHRAFRCAWQGNPYLLGHVVWGSMIFIVASNSVIPVMCVSPDDMHSCTIYDNQGHNTCSDRDRQMYGTDRRKVQAAVNAQVHDEQTTFQMCDQIIYPSIQLKEDIVVHPATLSDKPSSEKPAATNAAPAVPLPLTAEATPAQQTPSSESGSQNPSLAELARQTRQAPHDKAQTTLDSAEGTTVAPPGFQPFVLQYCQNPQQCSEASVVIPEKSEVISRTNGQYIFKAALDGESLMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPDSVSTQDLTIEDRPALMTRFRYQRDQKRWWIGERVLIENQGKQFLLGCAAPEEHFADAEALCTTLVNSLRLP
Ga0210395_100098517	F067006	AGGAG	MPMPRLHSIFVAGPLLLCAALFCAGPTLAHAQSRTAQHKLLLRADFKPGEVLRYELEAAGSFLPIADASGANLFPARGPCDYAMAAIVTLRPQPTDKDGNIPVEATYSDTHVTSVRCALFSAPDFQKRLAALQSSPVMFRVGPHGETEMSRSIDGYFKYWDGGDLLRKVTQDLLQTEFSPQPVAEGASWKPRGQFAYSRDRALKDLELSGADLRFRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210395_10009851

Overview

Ecosystem & Geography

Associated Families

Sequences