NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10001114

Scaffold Ga0210395_10001114


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10001114 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20881
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002139Metagenome / Metatranscriptome590Y
F042992Metagenome / Metatranscriptome157Y
F043664Metagenome / Metatranscriptome156Y
F056822Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100011141F043664N/ASELPLRGPPRDLRLGSGLTANRINLPYASELYLAFNISSSFASTSALL
Ga0210395_1000111411F042992N/ALLSLNGTLSLKNYDPTFSEVLWILAYWQGKCPVHDISLSGATIIWSDILKNPSQSDSSFPVNLSFPSPVPMTGCVGLYFGGGPLLEGKATMSADLSLTYQPVTNANPNIVLDVGGEYCFGQTGGCQNATDIDGEGFAVPIPMMTAGHLLELYGNISDSSFDGTNNFGPIPTGAAWGAANDFYLLPGGCGIFERNLNEQGFPNPAPLSTLHGWLPHDALHLASVPLVDRIAPGETGEVPLQGKVENIFSVPVAVNAGDCMVVIYGRNGNGATDNETQVKALMAP
Ga0210395_1000111414F056822AGGAGMSRVNGDKSRYNRIRKQNAAKRMRNRKLLKNAEVQAKPVASAASETKPA
Ga0210395_1000111421F002139GGAGGMPSPLYKTIRYEDDSLMTNRVAYAPHDFQKMCKQAERDHESRKLVVLMERVKRQIAERQNPGVKGEGSKPPMAATGVASGVLRLPSRSAPLER
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