Scaffold Ga0210395_10000209

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000209
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45730
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (85.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001621	Metagenome / Metatranscriptome	662	Y
F010410	Metagenome / Metatranscriptome	304	Y
F021354	Metagenome / Metatranscriptome	219	Y
F031943	Metagenome / Metatranscriptome	181	Y
F097733	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000020910	F031943	GAG	MQHLGRCAEQLRRAVRYLANSSCAPREKLRGVYDTEFGSIWHDDFPDGSLKEDYLTIISSIIKTDEPKAAVNIAAMSDDQARTVIQQICSLSLATAYALGRRSNSER
Ga0210395_1000020920	F001621	GAGG	MDNQVPRYVTQKRAALLLGIPEEELSRISRESELGHTERAGDQKETFFTYEELRRICFLSTH
Ga0210395_1000020933	F010410	AGGAG	MPSFPPKPRKFLAQLLVAGAMAMLLIPVARAGDEDQQAYCKYVTQQAAAQRDLLRTPDAVAGVTQPNTGLPTQVVWGLTGSLSNVRKAALTMDAARKDCELYTVSSSAQQAVQYAIPSLEKQALQNRLVLIQQASENLDALVAAITKMVEAHNMTRPMAFALESTKIKLAADRADTQSKIVAIYVPQLSDKPVKDLVAEKQASEDNERRAIYKINRQNDWDVALSVGAHQQVNPLIGSPGAYGEVTVSYNLASHAINKHLDQAAASYRDWKKVQEGDVFRNAEILRQQLVDSVSVEDNRLKASEEQQKQIETNLELLGRAETSAALDFGNQLSTAKLLLQIEIGDAAFRLDQLKEFLRRN
Ga0210395_1000020934	F021354	GGAG	MRDETTKQAAQEFLAAKLAEEGQRHEDKLNKETAVSRSLHIWKNFRDAVFAQCGEWNAVTQEQTLTCTETPMGDLRVWCSATAKQMTVYYDSRKLLITLRNGARHEVEKDAILQIEGYSTGPGRDAHLVRNNETVNIDALILGELRLLAGIGRQRTS
Ga0210395_100002099	F097733	GGAG	MKRGMKLNEFTPVITEYDDASGFPDEQSANSYCKEMNNQSFGWTVEKVKLGEADKWRVVWPGERVLDMWEKKVGSVTVTYSTEGTLSVGYTHSCDCRRGEYITGTIVHTSGERLARDEIENLTRFAEWVAQYTLRS