NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000209

Scaffold Ga0210395_10000209


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000209 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45730
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (85.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001621Metagenome / Metatranscriptome662Y
F010410Metagenome / Metatranscriptome304Y
F021354Metagenome / Metatranscriptome219Y
F031943Metagenome / Metatranscriptome181Y
F097733Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000020910F031943GAGMQHLGRCAEQLRRAVRYLANSSCAPREKLRGVYDTEFGSIWHDDFPDGSLKEDYLTIISSIIKTDEPKAAVNIAAMSDDQARTVIQQICSLSLATAYALGRRSNSER
Ga0210395_1000020920F001621GAGGMDNQVPRYVTQKRAALLLGIPEEELSRISRESELGHTERAGDQKETFFTYEELRRICFLSTH
Ga0210395_1000020933F010410AGGAGMPSFPPKPRKFLAQLLVAGAMAMLLIPVARAGDEDQQAYCKYVTQQAAAQRDLLRTPDAVAGVTQPNTGLPTQVVWGLTGSLSNVRKAALTMDAARKDCELYTVSSSAQQAVQYAIPSLEKQALQNRLVLIQQASENLDALVAAITKMVEAHNMTRPMAFALESTKIKLAADRADTQSKIVAIYVPQLSDKPVKDLVAEKQASEDNERRAIYKINRQNDWDVALSVGAHQQVNPLIGSPGAYGEVTVSYNLASHAINKHLDQAAASYRDWKKVQEGDVFRNAEILRQQLVDSVSVEDNRLKASEEQQKQIETNLELLGRAETSAALDFGNQLSTAKLLLQIEIGDAAFRLDQLKEFLRRN
Ga0210395_1000020934F021354GGAGMRDETTKQAAQEFLAAKLAEEGQRHEDKLNKETAVSRSLHIWKNFRDAVFAQCGEWNAVTQEQTLTCTETPMGDLRVWCSATAKQMTVYYDSRKLLITLRNGARHEVEKDAILQIEGYSTGPGRDAHLVRNNETVNIDALILGELRLLAGIGRQRTS
Ga0210395_100002099F097733GGAGMKRGMKLNEFTPVITEYDDASGFPDEQSANSYCKEMNNQSFGWTVEKVKLGEADKWRVVWPGERVLDMWEKKVGSVTVTYSTEGTLSVGYTHSCDCRRGEYITGTIVHTSGERLARDEIENLTRFAEWVAQYTLRS

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