Scaffold Ga0210395

Basic Information
Taxon OID	3300020582 Open in IMG/M
Scaffold ID	Ga0210395_10000204 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020582 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46678
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46678

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011020	Metagenome / Metatranscriptome	296	Y
F015323	Metagenome / Metatranscriptome	255	Y
F021579	Metagenome / Metatranscriptome	218	Y
F076423	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000020411	F021579	GGAGG	MQKAHLYEGILSVNRGIDQAVRGMELLKRAKDSGLKPGYFDEKLTLFEMHRALLNGYFCNNIQNSENRDDARFDRLHREYEKKALDEVQVYRDVQAIEERRRLEGRSPKVRFLSSEEQRAWEGLCSNLPGDVASDGERPEGDQK
Ga0210395_1000020413	F076423	AGGA	MEQRKALATRKARLRSAGRRYPGVQGKVVDYISHSIDDGTLCVNVCFEDKTLFSLRFACDVFIVSADIGDWKTGDYEMIREYIKPIPR
Ga0210395_1000020415	F011020	N/A	MASEQERLGTGTGKDLRVLCYQHHTEMLLRLLSESAEGVLYACQEPSCLVCYDSSDGYFIDTKNLKIIDEEIKPRVICPNDGHFMYLAEVTPQRRSFRLWKCPECNANRTNEETSGGLEKKMGA
Ga0210395_1000020440	F015323	GGAGG	VALLTASRRMRPWLLLLLCSVVSAGCNWIYGSSARQDVLYLKRDLSAADLSQWTHRDFGLGTDRGSDSSGAGFLLYHANVAGRRAAGMTVTPTAHASPAASSDSVYLWDRSQYWNYQPYEIWLRTSVMFPSAATIEAAGAPGEAAFAPTTGEWNWFLEFHNDSSPLPDCANEFANLSLDVKTDDPVASGVVGTKNPRMAMRIIGGNDCAPDIVWVDGPPLQWDHWYELLLHIKWDPKRGIAEWYLDNSDVPYYSNQEIPTLFTRPKGYLSPSYTNLTIPNYRLHAPWSSTIYIGPLAVGSTKSSVLNVF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210395_10000204

Overview

Ecosystem & Geography

Associated Families

Sequences