Scaffold Ga0210395_10000039

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000039
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142443
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (78.40%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F000678	Metagenome / Metatranscriptome	940	Y
F016891	Metagenome / Metatranscriptome	244	Y
F018213	Metagenome / Metatranscriptome	236	Y
F026069	Metagenome / Metatranscriptome	199	Y
F032360	Metagenome / Metatranscriptome	180	Y
F038866	Metagenome / Metatranscriptome	165	Y
F085956	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000039117	F026069	AGG	MWIFLLGPFLALFPRRWRKALPFYDAVHWRSAAILSGLAESALAIAGLMYWYSYSMTAWVSHALDDVLNKSSATGITDHEIGFAALVVWVTHPLTWGIAYFCIEGAWRLCASFTDTVLGVFPLYLLEKIYSKIFRRGAPEPPGAVKFSQGHVSSYVGTVTEKVLTARLSQVPDELSVSKNSSEEFLEIRASRAKPDWTPPRVVRYEDRYYRLEECSRGSGARPFVYKLRRLAAGVPGRSVLTYSPDEAPILASR
Ga0210395_1000003915	F016891	N/A	MPNLYFCQPHAKNQGMLRAVLSVNECERVVSKHPVTFFGESFPSLAEGPAGESDFAVLRFAAEETVGNWRPGFYRLDSNLVELNDALRDLQR
Ga0210395_1000003939	F032360	AGGAGG	MAETRRRFLVTLAAAASCSVAADGSVLAQVRKNNPFPTPPESAETQNPAEVAAAKSDPQSAKRVALQQNEKEFRVDVDRLCQLATELKQEVDRTVTTEVFSMQMYKRTQEIEKVAKMLKSKAKG
Ga0210395_1000003954	F000169	AGGAGG	MAKKSRLNQVAASIGGALGKADRKAHQVVKAGTLAKKELHDISIQVDALKRQLAKTTKRLKNALS
Ga0210395_1000003956	F018213	GGAGG	MIATLHFATLVFTTLFAAAAAVAFNWMLLRAMFFLMRPATATRLNSPTHLVRGTTQLTRAYASQR
Ga0210395_1000003967	F038866	GGGGG	MTWKDELLMLWIFCSVVIALAVRHFLGGAVYLVKQMAVFSLAYLPGLLHLLAGHLH
Ga0210395_1000003969	F085956	GAGG	LRCKVCGIDYGVSHECSGLSPFMTLEEAAPPPSEFAPFYYLRMAFNIVRWDDMAIRRASRDPNALVYGAALSAVSASIVFLVTALPGMLAHEGRTPGTIFWGLLLGLVFFWTYMGIIAAIQIGLCHAIAKIFLGATGTLAGVMRPLFLGWFVNVLILIPVVGVYAVGIAWTAVLMLVFEEIDGIRRMQAFLISAGINAVFVAIEILIPH
Ga0210395_1000003999	F000678	GGAG	MDKFEEFGRRIDEEVSRLKKINNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKLSEAAGWIESRNSARTEKDSQKPPSQS