Scaffold Ga0210395_10000032

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000032
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 165415
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 132 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000239	Metagenome / Metatranscriptome	1488	Y
F051311	Metagenome / Metatranscriptome	144	Y
F051719	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000032101	F000239	GGAGG	MDESRLHAIQFLEKEIKTYAALSLFLSKRGIKADLLLGAKKVLISPSFYKERMKEAKKLVHELRSTK
Ga0210395_10000032122	F051311	AGGA	MSDRVSWAMALHDFFGARGNDVATVSPNDLRNVWTMMRDLQARDLEGQSGSISSGLYEAACSPGANVVAVWYRASILGVLQMLPEKPLTTWSHEGELDDAVFQIAATFPMKKLPVGLVKNGLPFDLPELVKQIGART
Ga0210395_10000032140	F051719	GGAGG	VDTESRTDIYKTATAAVEEAAIVVVALLEEAMNNQVPKYVTQARASFLLGIAEAEFRRISEESGLGRVERASNEEETYFTYEELQRISMLAAQQMEAVH