Scaffold Ga0210395_10000020

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000020
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 243719
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 133 (63.03%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000426	Metagenome / Metatranscriptome	1154	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F003708	Metagenome / Metatranscriptome	473	Y
F005420	Metagenome / Metatranscriptome	401	Y
F042478	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_1000002015	F005420	AGGCGG	MKRGQISVLAWAMVAMALPLLGQSTAPTIYAESFRQGSTRITEETFDATLTPDDATYRERIKDALGNDRYELTISPQVMEGGKEITSWRVRLRDLHHNIYSNILLADQQPSPDAKNNLWWLNPNRFSSVPIRAKRIVKVDGFYVVMQVKDLHFTPLDSPYLDSMAVHFGFSNSDPRTVR
Ga0210395_10000020171	F003708	AGGA	MKLVTLILPTILLLVLSSAIPPAASGVRTAPAPQEPEPSALSTQVTIEPGLSIGPLKLGDTRERALELFPKKEEDLEWQNTCGTTLDWVDAQNPTGHGDLFIRLKKGKIFQIESSTTRFHTAEGITTFDHGDKVANAYKDMRAFTLLTPPAPALGDRPLVFWIDKKKGIAFAFAYYPAEHKRYLYKIIVFEPNKTFCPEEETTSSPKWQPIKSYALEPPPELAPNL
Ga0210395_10000020185	F000426	AGGAG	MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDDDNGVLAEVDETSLLEGDAMSAKAGAGSGSSASSSKAPRPAAPRWP
Ga0210395_10000020202	F001318	GGAGG	MKKFAWLLAIPVLISLAGAQVSQSLNPQGPGPQSLSSQNTVSQGSGSPSSDHDAGSGDRMFFPHDMLWGWAQLDLAPPHNEIDPNLCSGDAAANGGINDPCSLFARYMLSGILEVRPFGRGVLRRFMVYGAPTFLFGKTIPKTLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARDKNLGPADLGNNGPWGRYVTVGVRKTFGTRRW
Ga0210395_10000020203	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDSLVVGEKTESEVQESIRRWWALIHPADRPIAQKYLLLVLGRSASALDSMGDAFLSANSCEVLRPQMAETALPGKRMRLLERMVKESSVRSVV
Ga0210395_1000002096	F042478	GGAG	MVRSPRFSVISISVSALCWLLCSCGSGSAAPAAATEAQNFSCPAGQMDMMQYFVMSQQSRADQFMNGQQNPIYTEVFPDEDFASTGYWFWLKSVTANGFDVKAFDPNYVYLRSTELVWSDNTTFKRFVDDLPVAARCVASNAAGPEIQVADTTFQYYSACSPYKSSNLGTSLNDLDAPVVMDTGGNIGQVSTRVMHYRYNCDSAFQNCVNEEQFFLAIGYGLWQWKHYQNGTLVNSTLINNIEPGSPGGTLPCTQAYQ