Scaffold Ga0210395_10000016

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000016
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 258027
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 171 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000522	Metagenome / Metatranscriptome	1055	Y
F000668	Metagenome / Metatranscriptome	948	Y
F003947	Metagenome / Metatranscriptome	460	Y
F048442	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000016125	F000522	GAGG	MDHNEAVRKFEHLMLREADHAHETATELETLVSLLPSEKSRQLAQLQVKASHKLAKDFRELAQKVKES
Ga0210395_10000016131	F048442	N/A	MPSEVSRNNRRGIRTKAVIPVKVKGRDRSGKPFEELAITLDVTPDGVRLGSVHHELNLLEEVTVFYRTRKILFRVVWTKPMKGTSEFQVGLQALSQDSEAFGLNFADYKRQPVPEAAVPQPSGAA
Ga0210395_10000016173	F003947	AGGGGG	VDFQVNGETYFLSLAEDERRWLVFVESATGSRDVPVYVDEAETDDFKLVVDDKERRKILN
Ga0210395_1000001627	F000668	GGAG	MGTVKAIVGFLVIIAVVYVLFQVAPPALTNYSFEDDLKSVAVIGGSNPHTTDDELVAQVIKKAQEHQITLAPENVTVQRIGTPGSLAVYVAVDYSVPVTLPGYSFVLHFTPSSGNKGF