Scaffold Ga0210395_10000011

Overview

Basic Information

• Taxon OID: 3300020582
• Scaffold ID: Ga0210395_10000011
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 300709
• Total Scaffold Genes: 268
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (67.16%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000595	Metagenome / Metatranscriptome	999	Y
F000822	Metagenome / Metatranscriptome	876	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001431	Metagenome / Metatranscriptome	696	Y
F004485	Metagenome / Metatranscriptome	436	Y
F004490	Metagenome / Metatranscriptome	436	Y
F011872	Metagenome / Metatranscriptome	286	Y
F061220	Metagenome / Metatranscriptome	132	Y
F080284	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210395_10000011109	F001431	N/A	MPFIIKLIMRGTDLKTTERRETRMSTIQDVSAEQLAKLFHHYREALAHNGGDHGIKEESSAWDRAPQTERRLMVAAARLALIELATTPVESRPSRKYYAKPGEADWGC
Ga0210395_10000011119	F061220	GGAGG	MRLATLFCLFFSLAGISAAQDTNFSAGPQYLITSSSPMFLHSIATPSLSLEPSLPELQSLPQIGPAVEDQPFVANPELPRGADLFPIYYGSPAPSVVEITSTELPQELPASIADAGVTGMTTAQSLRERGYGVPLGDTAAFWKAHKHPAAHVYTNADVQRLHAS
Ga0210395_10000011121	F011872	AGGA	MAAESNTRTGKDSLKVEKLSLLVLTLCIVVLVYVLVARPF
Ga0210395_10000011187	F004485	AGGAG	MNYREHYTPGPASTVELCQLWSGHLDALERHLSANTWALAAVAAVLTIYPIGRIAIPAILHGIVTHGIVPDVVRNVLNVI
Ga0210395_10000011222	F000822	AGCAGG	MNSTGFRTGFQIKALQTKVLHSSIFRTMIFQTMIRCAVGVLALASVAFGQSSHVYRGEVSDSQCALNVHSLTRSHQEMLKSKEMGGTSSTCSMYCIEHLGGYLVLSAGKDVFRLDRADLVHGFEGQRVVVTGILDPKLKQIHVLKIDLEEKP
Ga0210395_1000001150	F000595	AGGAG	MDGITGLAAVIMVLGMPTAVLGMYTFYRVRKLRTEERLAAMQRGVSVPMEPDLTEAAHSRRAGILLIAGAVGYMLAFTIISRVEPDALIASAFGAIPFTLGVGYLLDSTLIRRETRA
Ga0210395_1000001175	F000978	GGTGG	MFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGMPPEGALNLAAWDMIRDIVSAEPALNQAAWESLRRGGVALLESGEESESGGDSRQRYRRAG
Ga0210395_1000001187	F004490	AGGA	MECGTKDELEQHLSDIRSLAVTKGLTSEQTTAAARAERFAIALVREHDSTGHKGKRCPYATRVSPSLEG
Ga0210395_1000001199	F080284	GGAGG	MEFEIASSNSDSDLTSKVSYGRLANRVAPDVQVVFKAAHDEMRRLIQQRVEITQRIGTIKQAIVGLCNLFGDDGLSDDLRELVNGKAAPRRPGITQACRKVLTDARCPLTARNVCEQIQQTMPDLPCAKNLLAEVTTVLSRLAQYGEARIVPCNGSRAWVWVSDVKDGSVEDESFHPVVPALDSQA